Curriculum Vitae

Education

PhD student in Computational Biology - University of Bern, Ass. Prof. Dr. T. Lemmin

2022 - Present

specializing in DL models for protein-ligand interactions

M.Sc. Bioinformatics - University of Hamburg

2019 - 2022

Thesis on methods to search for ligand-specific binding sites based on geometric patterns

B. Sc. Biochemistry - University of Tübingen

2015 - 2019

Thesis of quantitative analysis of the mouse gut metaproteome using isobaric labelling by tandem mass tags

Work Experience

Student Researcher - University of Hamburg, Prof. Dr. M. Rarey

April - September 2021

Implementation of tool 'LifeSoaks' into the SMARTSplus web server

Student Researcher - University of Hamburg, Prof. Dr. M. Rarey

January - June 2020

Maintenance of web page 'www.bioinformatik.de'

Intern through DAAD RISE scholarship - University of Bristol, Dr. F. Parmeggiani

June - September 2018

Design of interfaces on homooligomers using RosettaScripts to create self-assembling structures; Expression and purification of oligomers

Intern - MPI, Tübingen, Prof. Dr. E. Izaurralde

September 2017

MINI/MIDI-Preps, western blots, cloning (e.g. Gibson), transformation, cDNA synthesis, sequencing, PCR, immunoprecipitation

Skills

Technical Skills: Deep Learning, Biochemistry, Bioinformatics, Molecular Dynamics, Natural Language Processing

Languages: German (Native), English (C1), French (B2)

Other Skills: Linux, Python, Vim, tcl, VMD, OpenMM, LaTeX